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Gene Therapies for Sickle Cell Disease?

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发表于 6-15-2023 13:04:47 | 只看该作者 回帖奖励 |倒序浏览 |阅读模式
本帖最后由 choi 于 6-17-2023 11:56 编辑

Jonathan Saltzman, Sickle Cell, Neglected for Years, Near Fix; Gene treatments promise relief from disease afflicting mostly people of color. Boston Globe, June 11, 2023, at page A1 top report.
https://www.bostonglobe.com/2023 ... ne-based-therapies/

My comment:
(a) The discussion below of hemoglobin is restricted to humans 00 not other species.
(i) Hemoglobin is made of both heme and globin (the latter is protein).
(ii) A heme is composed of porphyrin (specifically protoporphyrin IX) and Ferrous iron (Fe2+).
(A) porphyrin
https://en.wikipedia.org/wiki/Porphyrin
("The name 'porphyrin' derives from the Greek word πορφύρα (porphyra), meaning purple"/ section 4 Laboratory synthesis: the ingredient is pyrrole, end product of porphyrin being purple)

Look at the chemical structure at upper right corner in this Wiki page.

pyrrole
https://en.wikipedia.org/wiki/Pyrrole
(section 2 History: name)
(B) One of porphyrins is protoporphyrin IX
https://en.wikipedia.org/wiki/Protoporphyrin_IX''

You need not read Section 1 nomenclature. All you have to know is that various porphyrins (that accounts for protoporphyrin and Roman numeral IX) have their differences in the side chains of the four

Section 2 Properties tells you that color of chicken's brown eggshell is due to presence of protoporphyrin IX.

Section 4 Biosynthesis says that the final product protoporphyrin IX becomes a (red) heme with Fe2+ in the center, and become a (green) chlorophill with Magnesium ion 2+ in the center.
(C) heme
https://en.wikipedia.org/wiki/Heme
("The word haem is derived from Greek αἷμα haima meaning 'blood' ")
, whose upper right corner shows you what a heme looks like chemically. The lower one is "space-filling model of the Fe-protoporphyrin IX." A red ball is an oxygen atom: there are four of them, because there are two carboxyl groups (-COOH) in a protoporphyrin IX.
(iii)
(A) globin
https://en.wikipedia.org/wiki/Globin
("The globins are a superfamily of heme-containing globular proteins, involved in binding and/or transporting oxygen": such as hemoglobin and myoglobin)
(B) hemoglobin
https://en.wikipedia.org/wiki/Hemoglobin

Humans have three major globins: alpha, beta and gamma. Section 2 Genetics has a chart of amino-acid composition of these three globins, which are quite similar.

Section 9 Types in humans has
"In the fetus: hemoglobin F (α2γ2) * * *
After birth: hemoglobin A (adult hemoglobin) (α2β2) * * * ")
To the right is a graph, with time as x-axis and amount as y-axis.
(C) sickle cell disease
https://en.wikipedia.org/wiki/Sickle_cell_disease
("As of 2015, about 4.4 million people have sickle cell disease [two mutated genes, one from each parent], while an additional 43 million have sickle cell trait [one mutated gene]. About 80% of sickle cell disease cases are believed to occur in Sub-Saharan Africa")

section 2 Genetics: "Sickle cell disease has an autosomal recessive pattern of inheritance from parents. * * * Sickle cell gene mutation probably arose spontaneously in different geographic areas [but all shared the same mutation: in ONE nucleotide, namely A to T (see next)] * * * The gene defect is a single nucleotide mutation[:] (GAG codon changing to GTG) of the β-globin gene, which results in glutamate (E/Glu) being substituted by valine (V/Val) at position 6 (E6V substitution). * * * [Symptoms appear only] under low oxygen concentration [that causes hemoglobin to stick together and red cells turn sickle shaped]."

An amino acid has a name, say, valine, whose abbreviation may be three letters (Val) or one letter (V). Glutamate has one-letter abbreviation E because another amino acid glycine has one-letter abbreviation as G already.


(b) "Sickle cell disease was the first human disorder understood on a molecular level, its underpinnings explained in a landmark 1949 paper by a future two-time Nobel laureate."
(i)
(A) The Nobel laureate turns out to be Linus Pauling
https://en.wikipedia.org/wiki/Linus_Pauling
(1901 – 1994; American chemist; bachelor's in chemical engineering from Oregon State Univ in 1922 and PhD in physical chemistry and mathematical physics from Caltech in 1925; table: Nobel Prize in Chemistry (1954), Nobel Peace Prize (1962) + The only person to win two unshared Nobel Prizes
(B) The male given name Linus, popular in Sweden, came from Linus (mythology)
https://en.wikipedia.org/wiki/Linus_(mythology)
(may refer to "Linus, son of Apollo and Psamathe")
(ii)
(A) Tracy Smith, First Molecular Explanation of Disease. Nature Structural Biology volume 6: 307 (1999)
https://www.nature.com/articles/nsb0499_307

The first three paragraphs (footnotes omitted):

"The first documented case of sickle cell anemia was published in 1910 by a[n American] physician named James [B] Herrick. He described a 20 year old college student who was severely anemic. A smear of this patient's blood showed that 'the shape of the red cells was very irregular, but what especially attracted attention was the large number of thin, elongated, sickle-shaped and crescent-shaped forms.' * * * "

" * * * in 1949, this disease caught the attention of Linus Pauling. Since red blood cells contain large amounts of hemoglobin, Pauling thought it would be worthwhile to examine the properties of hemoglobin obtained from sickle cells. He and his colleagues were not disappointed: they found that both the oxygenated and deoxygenated forms of sickle cell hemoglobin had higher isoelectric points (7.09 and 6.91, respectively) than those of hemoglobin from normal erythrocytes (6.87 and 6.68, respectively), suggesting that sickle cell hemoglobin is more positively charged than normal hemoglobin. Pauling and colleagues published their results in a paper entitled 'Sickle cell anemia: a molecular disease,' as it was the first demonstration of 'a change produced in a protein molecule by an allelic change in a single gene.'

"In 1957, Vernon Ingram reported the exact difference between sickle cell and wild type hemoglobin. His experiments showed that not all of the tryptic peptides from sickle cell and normal hemoglobin had matching positions when run out on an electrophoresis/chromatography two dimensional gel: one pair of peptides ran differently. Ingram sequenced these two peptides and showed that the β chain of sickle cell hemoglobin had a valine residue at a position where normal hemoglobin had a glutamic acid residue.[footnote 3]  The atomic structure of hemoglobin, determined by Max Perutz and colleagues4, showed that this residue position is located on the surface of the protein. The mutation makes sickle cell hemoglobin less soluble and more prone to form the distinct fibrous precipitates that cause the erythrocytes to adopt the deformed 'sickle' shape. * * *

Footnote 3 was Ingram VM, Gene Mutation in Human Haemoglobin: the Chemical Difference Between Normal and Sickle Cell Haemoglobin. Nature 180, 326–328 (1957).
(B) Pauling N et al, Sickle Cell Anemia, a Molecular Disease/ Science, 110: 543 (1949)
https://www.science.org/doi/10.1126/science.110.2865.543
is locked behind paywall (*except the first page, which said nothing important.
(iii) Vernon Ingram
https://en.wikipedia.org/wiki/Vernon_Ingram
(1924 – 2006; born in present-day Poland [as Jewish German]; from Birkbeck College at the University of London, received a bachelor's degree in chemistry in 1945 and a PhD in organic chemistry in 1949; "This [the 1956 publication] was the first time a researcher demonstrated that a single amino acid exchange in a protein can cause a disease or disorder. As a result, Vernon Ingram is sometimes referred to as 'The father of Molecular Medicine.'  Ingram joined the MIT faculty in 1958 * * * He was elected to the National Academy of Sciences in 2002.  Ingram died in Boston, Massachusetts, on 17 August 2006 of injuries stemming from a fall")

I was a postdoc under Ingram for the last seven months of 1990. Nobody wanted the position, and I was the only applicant for months. He took me, but thought that, as work progressed, I was dumb; he repeatedly commanded me to "think with your brain." I did not know who he was until a German postdoc  (there were only two) in the lab said Ingram used to be a big shot (recruited to MIT in 1958 at age 36 directly as professor without having to be associate professor), deciding nutation of a single amino acid change underlied sickle cell disease around the time amino acid sequencing was invented by Frederick Sanger
https://en.wikipedia.org/wiki/Frederick_Sanger
(1918 – 2013; English; table: Nobel Prize in Chemistry (1958) [for 'determin[ing] the complete amino acid sequence of the two polypeptide chains of bovine insulin, A and B, in 1952 and 1951, respectively']; Nobel Prize in Chemistry (1980) [for DNA sequencing])
Bovine insulin has A and B chains, made up of 21 and 30 amino acids, respectively. "There is a difference in 3 amino acids, 2 in the A chain and 1 in the B chain, between human and bovine insulin.": from the Web.
Both Sanger and Ingram worked at University of Cambridge at the time,


(c)
(i) cystic fibrosis
https://en.wikipedia.org/wiki/Cystic_fibrosis
("affects mostly the lungs * * * Long-term issues include difficulty breathing and coughing up mucus as a result of frequent lung infections. * * * Cystic fibrosis is inherited in an autosomal recessive manner. It is caused by the presence of mutations in both copies of the gene for the cystic fibrosis transmembrane conductance regulator (CFTR) protein. Those with a single working copy are carriers and otherwise mostly healthy. CFTR is involved in the production of sweat, digestive fluids, and mucus. * * * There is no known cure [or gene therapy] for cystic fibrosis. * * * The name 'cystic fibrosis' refers to the characteristic fibrosis and cysts that form within the pancreas")
(ii) Elaine Yu and Sandeep Sharma, Cystic Fibrosis. StatPearls, last updated Aug 8, 2022
https://www.ncbi.nlm.nih.gov/books/NBK493206/
("In medieval Europe, these children [afflicted with the disease] were believed to be cursed by witches and doomed to die. The curse that became folklore pronounced, 'Woe to the child who tastes salty from a kiss on the brow, for he is cursed and soon will die.' Salty skin was a sign of an impending illness without cause or cure. [before the CFTR gene was found:] High levels of salt in the sweat of patients with cystic fibrosis suggested an abnormality in electrolyte transport from the sweat gland. * * * Researchers now know that cystic fibrosis is an autosomal recessive disorder of exocrine gland function most commonly affecting persons of Northern European descent at a rate of 1 in 3500.  It is a chronic disease that frequently leads to chronic sinopulmonary infections and pancreatic insufficiency. The most common cause of death is end-stage lung disease.  CF is caused by a genetic mutation in a gene on chromosome 7 that codes for a protein transmembrane conductance regulator (CFTR) protein, which functions as a transmembrane cAMP-activated chloride channel. Both copies of the gene are mutated in clinical disease.  There are over 2000 different mutations in the CFTR gene that can cause disease")

(d) "The medicine from Vertex and CRISPR is called exa-cel and would be the first US-marketed treatment based on CRISPR."

The term "exa cell" is a trademark of the two pharmaceutical companies (Vertex and CRISPR). There is scant information about the two gene therapies described in this Globe article *because FDA has not approved the treatment). But the companies show in simple online sketches that blood cells are drawn from patients who participated in experiments, treated with gene therapy and then returned to the respective bodies. My guess is that the genetic procedure outside the body is to SELECT the mutation on the site pharmaceutical companies desire. Recall that Crispr needs introduction of a small guide RNA (gRNA) of your choice and making. The gRNA is short: 17-24 nucleotides. So the chance of gRNA's similarity with DNA sequences in the entire DNA sequences (genome) is high. So Crispr is highly likely disrupt other, unintended genes. That is why China arrested the scientist who experimented with embryos: HE Jiankui 贺建奎.
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沙发
 楼主| 发表于 6-15-2023 13:05:31 | 只看该作者
----------------text
It's one of the great paradoxes of medicine.

Sickle cell disease was the first human disorder understood on a molecular level, its underpinnings explained in a landmark 1949 paper by a future two-time Nobel laureate.

Yet the inherited blood disease ― which causes unpredictable bouts of crushing pain, damages organs, and cuts lives short ― has eluded transformative treatments longer than a number of other genetic diseases, including far rarer ones. Sickle cell mostly affects people of color, and many experts attribute the slower progress in developing medicines to structural racism, especially in funding for research.

But the outlook for the estimated 100,000 Americans suffering from the condition could improve soon.

Two rival gene-based treatments developed by three biotech firms with headquarters, or most of their operations, in Massachusetts could be approved late this year or early in 2024.

The medicines ― a gene therapy from Bluebird Bio and a gene-editing treatment by a partnership between Vertex Pharmaceuticals and CRISPR Therapeutics ― have generated extraordinarily promising results in clinical trials. Some scientists even call them “potentially curative,” although others say that conclusion is premature.

Still, no one disputes that the one-time intravenous infusions could mark the biggest scientific advance ever in treating sickle cell disease.

“They're both amazing,” said Dr. Julie Kanter, director of the adult sickle cell clinic at the University of Alabama at Birmingham and one of the principal investigators for Bluebird's trial, who says it's too soon to use the word 'cure.' “I call the therapy highly transformative ― both of them.”

Recipients of the experimental treatments report dramatic decreases in the searing pain crises that are a hallmark of sickle cell. The change is so life-altering, some patients say, that they have been able to hold down a job for the first time in years.

“If I have pain, it's from working, which I'll take any day,” said Victoria Gray, 37, who in 2019 became the first patient to have her genes edited in the Vertex-CRISPR clinical trial and has worked since December 2021 as a cashier at Walmart in Forest, Miss. “I'm still a sickle cell patient, but I don't have sickle cell occurrences.” Gray underwent treatment at Sarah Cannon Research Institute in Nashville.

Dvaizea Moore, who at 5 years old suffered a stroke brought on by sickle cell disease, reported similar results about the Bluebird gene therapy he received in February at the University of Alabama at the suggestion of his doctor, Kanter.

“I haven't had any pain since the transplant, and it's never been like that in my life,” said Moore, 29, who lives near Birmingham and recently began working as a car mechanic.

Despite such remarkable outcomes, several sickle cell specialists worry about the cost of the treatments ― and the resulting impact on federal and private insurance plans ― if they win approval from the Food and Drug Administration. Each medicine is expected to cost at least $1 million to $2 million, not including the expense of administering them and other aspects of the treatment. That rivals the seven-figure prices of a handful of other recently approved gene-based therapies for rare inherited diseases.

It also remains to be seen how durable the benefits of the therapies are. Researchers plan to follow trial volunteers for 15 years after treatment.

Nonetheless, the influential Institute for Clinical and Economic Review, or ICER, an independent Boston-based drug-pricing watchdog, said either therapy could go for nearly $2 million and be worth it, given the cumulative costs of treating sickle cell over a lifetime and the benefits the new approaches would bring to patients and families.

“From the earliest days of gene therapy, patients, families, and clinicians have imagined that someday it might be possible to address the underlying genetics of sickle cell to achieve a cure,” Dr. David Rind, ICER's chief medical officer, said in April when the group issued a draft report that it plans to update next month. “These first two genetic therapies, using different technologies and altering different genetic targets, may mean that day has nearly arrived.”

Boston-based Vertex and CRISPR Therapeutics, which is headquartered in Switzerland but has 400 of its 500 employees in Massachusetts, announced that they applied for FDA approval in early April. They expect a decision by Dec. 8. Somerville-based Bluebird applied for approval in late April and has said it hopes to market its gene therapy early next year.

Sickle cell is a group of inherited blood disorders that affect hemoglobin, the oxygen-carrying protein in red blood cells. It occurs in about one out of 365 Black births in the US, and one out of 16,300 Hispanic American births, according to the Centers for Disease Control and Prevention. Millions of people worldwide have the condition. White people are rarely diagnosed with it.

The disease causes round, flexible red blood cells to deform into a sickle shape and stick to vessel walls. That deprives tissues of oxygen, resulting in pain and often necessitating blood transfusions. The blocked blood flow can also lead to strokes, damage organs, and cause early death. A 2019 study in JAMA Network Open estimated the life expectancy of adults with sickle cell in the US is 54 years, about 20 years shorter than the general population.

People with sickle cell inherit two faulty hemoglobin genes ― one from each parent. If someone inherits just one defective copy, that person is said to have sickle-cell trait but can lead a normal life. Indeed, having the single faulty gene appears to serve an evolutionary purpose; it confers protection against severe cases of malaria, the life-threatening disease spread by mosquitoes. Sickle cell trait is more common in people of African descent, whose ancestors come from tropical regions where malaria is endemic.

Nearly three-quarters of a century ago, renowned biochemist Linus Pauling and several collaborators wrote a classic paper that identified a structural flaw in the hemoglobin of people with sickle cell. It marked the first time scientists provided a molecular explanation for a disease and helped to usher in the field of molecular medicine.

In the years that followed, however, efforts to develop disease-modifying treatments moved slowly, particularly compared with those for other inherited disorders. That disparity, many specialists say, reflects persistent racial inequities in health care.

“If this was a disease of white people, we would have cured it decades ago,” said Dr. Sharl Azar, a hematologist at Massachusetts General Hospital and medical director of its Comprehensive Sickle Cell Disease Treatment Center.

That bias has affected everything about the treatment of the disorder, specialists say, including how much federal funding sickle cell research has received, the number of drugs approved, even how medical personnel at hospital emergency rooms sometimes respond skeptically to patients seeking opioid medications to relieve debilitating pain.

“I feel sorry for you sicklers because you've become addicted to pain medicine,” Gray, the recipient of the CRISPR treatment, recalled an emergency room nurse in Mississippi telling her when Gray was in agony. Many people with sickle cell disease consider the word “sickler” offensive.

To illustrate the disparities between sickle cell and other genetic maladies, experts often cite cystic fibrosis, another inherited, progressive, and life-threatening condition, but one that afflicts mostly white patients.

Cystic fibrosis, which results in a thick, sticky buildup of mucus in the lungs and other organs, is about one-third as common as sickle cell disease in the US. Yet it has received 7 to 11 times the federal and foundation research funding per patient, according to a 2020 article in the New England Journal of Medicine. (Foundations rely on charitable contributions, and Black Americans historically have less access to intergenerational wealth.) Meanwhile, the FDA had at the time of the article cleared four medications for sickle cell, compared with 15 for cystic fibrosis, including four expensive blockbuster drugs from Vertex.

Dr. Patrick McGann, who co-wrote the article and runs sickle cell programs at Rhode Island Hospital and Hasbro Children's Hospital in Providence, noted that it wasn't until 1972 that the federal government began funding the fight against the disease after President Richard Nixon cited a “sad and shameful” history of neglect.

Vertex itself has acknowledged that sickle cell patients have historically been marginalized. Last year the company and the nonprofit Vertex Foundation earmarked $50 million over five years for programs to address racial inequities in health care, including a $2 million gift to the Mass. General sickle cell treatment center.

For decades, the only potential cure for sickle cell has been a transplant of bone marrow from someone whose body makes normal hemoglobin. But the procedure can be risky and is usually reserved for patients with a healthy sibling to provide normal bone marrow cells. Only about 15 to 20 percent of patients have a suitable match.

In 1998, the FDA approved hydroxyurea, the first disease-modifying drug, but it doesn't work for everyone.

In contrast, the two gene-based therapies seek to permanently fix the DNA of damaged blood cells in people with the disease with a single infusion.

The medicine from Vertex and CRISPR is called exa-cel and would be the first US-marketed treatment based on CRISPR, the revolutionary Nobel Prize-winning gene-editing technology. It works by editing a patient's bone marrow cells to make high levels of fetal hemoglobin ― the healthy, oxygen-carrying form of hemoglobin produced during fetal development that is replaced by adult hemoglobin soon after birth.

Unlike adult hemoglobin, fetal hemoglobin resists forming a crescent shape in sickle cell patients, and scientists have long wanted to find a way to restart it. The discovery of CRISPR in 2012 made it possible to flip the genetic switch, with what appears to be remarkable effect. Sixty days after their genes were edited in the Vertex-CRISPR trial, 16 of 17 sickle cell patients were free of pain crises. That relief has lasted at least a year and as long as three years so far, according to the latest data from the firms on Friday.

Vertex and CRISPR have also tested the treatment for beta thalassemia, a related but rarer blood disease, with similarly impressive results.

Bluebird's sickle cell therapy is called lovo-cel and works differently. It uses an engineered virus to insert a modified gene into the DNA of a patient's blood stem cells. The healthy gene enables cells to produce a form of adult hemoglobin that has anti-sickling properties. Richard Colvin, Bluebird's chief medical officer, said 97 percent of patients who received the therapy haven't had pain that required hospitalization since the treatment, and 90 percent haven't had any pain.

Both therapies for sickle cell require patients to undergo a round of chemotherapy to make room in their bone marrow for the genetically altered cells that produce healthy hemoglobin. That can be an ordeal.

Moore, the Alabama man in the Bluebird trial, said the chemotherapy temporarily darkened his skin, caused painful sores in his mouth, and made his hair fall out.

Nonetheless, he said, the side effects were a small price to pay for the relief from sickle cell. He no longer needs blood transfusions, which he used to receive every four weeks. And his pain episodes, which felt like his bones were breaking, are gone. “I feel like a brand-new person,” he said.

As promising as the rival therapies are, some sickle cell patients say they aren't interested in them, at least partly because they already have been hospitalized so many times and the disease has taken an irreversible toll on their bodies.

Dima Hendricks, a 41-year-old patient who lives in Brockton and counsels others with sickle cell, began participating in the trial of another gene therapy developed at Boston Children's Hospital in 2018. But she had to drop out because of a blood clot that went to her heart. She had open heart surgery and spent two months at Brigham and Women's Hospital.

Not long afterward, Hendricks said, she started taking a newly approved once-daily pill called Oxbryta that boosts hemoglobin and is made by a Pfizer subsidiary. Although the drug is not a cure, she has been hospitalized only twice since then and feels more energetic.

“I'm happy that they're finally coming up with some curative therapies for sickle cell disease,” she said of the gene-based treatments. “I do hope they get approved so there can be options for younger people. But people living with sickle cell disease for, like, 30 years-plus, we need to err on the side of caution. It's riskier for individuals that are older like me because we have so much damage to our bodies.”
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